API for GeneSelector
Stability and Aggregation of ranked gene lists

Global functions
AdjustPvalues	Man page
AggregateMC	Man page
AggregateMC,RepeatedRanking-method	Man page
AggregateMC-methods	Man page
AggregatePenalty	Man page
AggregatePenalty,RepeatedRanking-method	Man page
AggregatePenalty-methods	Man page
AggregateSVD	Man page
AggregateSVD,RepeatedRanking-method	Man page
AggregateSVD-methods	Man page
AggregateSimple	Man page
AggregateSimple,RepeatedRanking-method	Man page
AggregateSimple-methods	Man page
AggregatedRanking	Man page
AggregatedRanking-class	Man page
BootMatrix	Man page
BootMatrix-class	Man page
FoldMatrix	Man page
FoldMatrix-class	Man page
FoldMatrix-method	Man page
GeneRanking	Man page
GeneRanking-class	Man page
GeneSelector	Man page
GeneSelector,list-method	Man page
GeneSelector-methods	Man page
GeneSelector-package	Man page
GeneSelectorOutput	Man page
GeneSelectorOutput-class	Man page
GenerateBootMatrix	Man page
GenerateBootMatrix,ExpressionSet,character-method	Man page
GenerateBootMatrix,missing,factor-method	Man page
GenerateBootMatrix,missing,numeric-method	Man page
GenerateBootMatrix-methods	Man page
GenerateFoldMatrix	Man page
GenerateFoldMatrix,ExpressionSet,character-method	Man page
GenerateFoldMatrix,missing,factor-method	Man page
GenerateFoldMatrix,missing,numeric-method	Man page
GenerateFoldMatrix-methods	Man page
GetStabilityDistance	Man page
GetStabilityDistance,RepeatedRanking-method	Man page
GetStabilityDistance-methods	Man page
GetStabilityOverlap	Man page
GetStabilityOverlap,RepeatedRanking-method	Man page
GetStabilityOverlap-methods	Man page
GetStabilityUnion	Man page
GetStabilityUnion,RepeatedRanking-method	Man page
GetStabilityUnion-methods	Man page
HeatmapRankings	Man page
HeatmapRankings,RepeatedRanking-method	Man page
HeatmapRankings-methods	Man page
MergeMethods	Man page
MergeMethods,list-method	Man page
MergeMethods-methods	Man page
MergeRankings	Man page
MergeRankings,RepeatedRanking,RepeatedRanking-method	Man page
MergeRankings-methods	Man page
RankingBaldiLong	Man page
RankingBaldiLong,ExpressionSet,character-method	Man page
RankingBaldiLong,matrix,factor-method	Man page
RankingBaldiLong,matrix,numeric-method	Man page
RankingBaldiLong-methods	Man page
RankingEbam	Man page
RankingEbam,ExpressionSet,character-method	Man page
RankingEbam,matrix,factor-method	Man page
RankingEbam,matrix,numeric-method	Man page
RankingEbam-methods	Man page
RankingFC	Man page
RankingFC,ExpressionSet,character-method	Man page
RankingFC,matrix,factor-method	Man page
RankingFC,matrix,numeric-method	Man page
RankingFC-methods	Man page
RankingFoxDimmic	Man page
RankingFoxDimmic,ExpressionSet,character-method	Man page
RankingFoxDimmic,matrix,factor-method	Man page
RankingFoxDimmic,matrix,numeric-method	Man page
RankingFoxDimmic-methods	Man page
RankingLimma	Man page
RankingLimma,ExpressionSet,character-method	Man page
RankingLimma,matrix,factor-method	Man page
RankingLimma,matrix,numeric-method	Man page
RankingLimma-methods	Man page
RankingPermutation	Man page
RankingPermutation,ExpressionSet,character-method	Man page
RankingPermutation,matrix,factor-method	Man page
RankingPermutation,matrix,numeric-method	Man page
RankingPermutation-methods	Man page
RankingSam	Man page
RankingSam,ExpressionSet,character-method	Man page
RankingSam,matrix,factor-method	Man page
RankingSam,matrix,numeric-method	Man page
RankingSam-methods	Man page
RankingShrinkageT	Man page
RankingShrinkageT,ExpressionSet,character-method	Man page
RankingShrinkageT,matrix,factor-method	Man page
RankingShrinkageT,matrix,numeric-method	Man page
RankingShrinkageT-methods	Man page
RankingSoftthresholdT	Man page
RankingSoftthresholdT,ExpressionSet,character-method	Man page
RankingSoftthresholdT,matrix,factor-method	Man page
RankingSoftthresholdT,matrix,numeric-method	Man page
RankingSoftthresholdT-methods	Man page
RankingTstat	Man page
RankingTstat,ExpressionSet,character-method	Man page
RankingTstat,matrix,factor-method	Man page
RankingTstat,matrix,numeric-method	Man page
RankingTstat-methods	Man page
RankingWelchT	Man page
RankingWelchT,ExpressionSet,character-method	Man page
RankingWelchT,matrix,factor-method	Man page
RankingWelchT,matrix,numeric-method	Man page
RankingWelchT-methods	Man page
RankingWilcEbam	Man page
RankingWilcEbam,ExpressionSet,character-method	Man page
RankingWilcEbam,matrix,factor-method	Man page
RankingWilcEbam,matrix,numeric-method	Man page
RankingWilcEbam-methods	Man page
RankingWilcoxon	Man page
RankingWilcoxon,ExpressionSet,character-method	Man page
RankingWilcoxon,matrix,factor-method	Man page
RankingWilcoxon,matrix,numeric-method	Man page
RankingWilcoxon-methods	Man page
RepeatRanking	Man page
RepeatRanking,GeneRanking,BootMatrix,missing,missing,missing-met	Man page
RepeatRanking,GeneRanking,FoldMatrix,ANY,missing,missing-method	Man page
RepeatRanking,GeneRanking,missing,missing,ANY,ANY-method	Man page
RepeatRanking-methods	Man page
RepeatedRanking	Man page
RepeatedRanking-class	Man page
SelectedGenes	Man page
SelectedGenes,GeneSelectorOutput-method	Man page
SelectedGenes-methods	Man page
StabilityDistance	Man page
StabilityDistance-class	Man page
StabilityOverlap	Man page
StabilityOverlap-class	Man page
StabilityUnion	Man page
StabilityUnion-class	Man page
combn	Man page
dispersion	Man page
dispersion,RepeatedRanking-method	Man page
getLambda	Man page
overlap	Man page
plot,AggregatedRanking,missing-method	Man page
plot,GeneSelectorOutput,missing-method	Man page
plot,RepeatedRanking	Man page
plot,RepeatedRanking,missing-method	Man page
plot,StabilityOverlap,missing-method	Man page
plot,StabilityUnion,missing-method	Man page
samplingcontrol	Man page
show,AggregatedRanking-method	Man page
show,BootMatrix-method	Man page
show,FoldMatrix-method	Man page
show,GeneRanking-method	Man page
show,GeneSelectorOutput-method	Man page
show,RepeatedRanking-method	Man page
show,StabilityDistance-method	Man page
show,StabilityOverlap-method	Man page
show,StabilityUnion-method	Man page
summary,BootMatrix-method	Man page Man page
summary,FoldMatrix-method	Man page
summary,GeneRanking	Man page
summary,GeneRanking-method	Man page
summary,StabilityDistance-method	Man page
summary,StabilityOverlap-method	Man page
toplist	Man page
toplist,AggregatedRanking-method	Man page
toplist,GeneRanking-method	Man page
toplist,GeneSelectorOutput-method	Man page
toplist,RepeatedRanking-method	Man page
toplist-methods	Man page
toydata	Man page
unioncount	Man page