Object returned by a call to RepeatRanking or MergeMethods
The ranking based on the original data set (output from RepeatRanking) or on a reference
method (output from MergeMethods), represented by an object of class
The rankings obtained from altered datasets (output from RepeatRanking or from different methods (output from MergeMethods),
stored as a matrix.
One column represents one replication (output from RepeatRanking or one method (output from MergeMethods). Each
column is of the same structure as the
ranking of the class
The matrix of p-values stored analogously to
rankings. If p-values
have not been computed, this is a matrix of
The statistics obtained from altered data sets,
stored analogously to
A character for the resampling scheme, can be one
"jittering" (if noise
has been added),
"merged (rankings)" if several
resampling schemes for the same dataset and ranking method
have been combined via the
"merged (methods)" if the rankings of several methods have been
combined via the
show(RepeatedRanking-Object) for brief information.
to get information about the top
for each ranking and one
overview table showing frequencies of gene indices
for each of the ranks
Additionally, only the overview table can be shown with
all other output suppressed using
Genewise variance estimation, s. dispersion,RepeatedRanking-method
to combine results from different resampling schemes. The
results is again an object of class
where the slot
"merged (rankings)" and
all matrices have been concatenated columnwise.
plot(RepeatedRanking-Object) for a scatterplot
of the reference ranking (slot
original) vs. alternative rankings (slot
GeneRanking, RepeatRanking, MergeMethods, dispersion, HeatmapRankings
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