Description Usage Arguments Value Note Author(s) References See Also Examples
The function is a wrapper for mt.sample.teststat
from the package multtest
(Dudoit et al., 2003). The ranking is
based on permutation pvalues first, followed by the
absolute value of the statistic.
1  RankingPermutation(x, y, type = "unpaired", B = 100, gene.names = NULL, ...)

x 
A 
y 
If 
type 
Only the two sample case, 
B 
The number of permutations to generate. Defaults to 100,
but should be increased if computing power admits. Taking

gene.names 
An optional vector of gene names. 
... 
Further arguments passed to 
An object of class GeneRanking
The pvalues, on which the ranking is primarily based, suffer from
the discreteness of the procedure. They follow a step function
with jump heights 1/B
.
Martin Slawski
AnneLaure Boulesteix
Dudoit, S., Shaffer, J.P., Boldrick, J.C. (2003).
Multiple Hypothesis Testing in Microarray Experiments
Statistical Science, 18, 71103
RepeatRanking, RankingTstat, RankingFC, RankingWelchT, RankingWilcoxon, RankingBaldiLong, RankingFoxDimmic, RankingLimma, RankingEbam, RankingWilcEbam, RankingSam, RankingShrinkageT, RankingSoftthresholdT
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