Description Usage Arguments Value Author(s) References See Also Examples
The shrinkage t statistic stabilizes the estimated variances appearing in the denominator of the statistic via a JamesSteinShrinkage approach (OpgenRhein and Strimmer, 2007). In this implementation, the shrinkage target is the median of the variances.
1  RankingShrinkageT(x, y, type = c("unpaired", "paired", "onesample"), gene.names = NULL, ...)

x 
A 
y 
If 
type 

gene.names 
An optional vector of gene names. 
... 
Currently unused argument. 
An object of class GeneRanking.
Martin Slawski
AnneLaure Boulesteix
OpgenRhein, R., Strimmer, K. (2007).
Accurate Ranking of Differentially Expressed Genes
by a DistributionFree Shrinkage Approach.
Statistical Applications in Genetics and
Molecular Biology, Vol. 6, Iss. 1, Art.9
RepeatRanking, RankingTstat, RankingFC, RankingWelchT, RankingWilcoxon, RankingBaldiLong, RankingFoxDimmic, RankingLimma, RankingEbam, RankingWilcEbam, RankingSam, RankingSoftthresholdT, RankingPermutation
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