Description Slots Methods Author(s) References
An object returned from a call to GetStabilityUnion.
A numeric vector of scores derived from union counts, normalized such that 1 is the maximum attainable value. The entries
correspond to the positions in the list such that the
i-th entry contains the score derived from the union count up to position
A numeric vector of union scores, arranged analogously to
A list containing an approximation to the expected union count and -score if
GetStabilityUnion has been set to a positive integer. Otherwise, the list is empty.
The decay scheme used for the weights, s. GetStabilityUnion.
show(object) for brief information.
plot(object, frac=1/50, ...) produces a graphical display
of the union count (upper panel) and union score (lower panel) for increasing list position, ranging from
frac*number of genes. The
... argument may be used to modify graphical options.
Stolovitzky, G. (2003).
Gene selection in microarray data: the elephant, the blind men and our algorithms. Current Opinion in Structural Biology 13, 370-376
Jurman, G., Merler, S., Barla, A., Paoli, S., Galea, A., Furlanello, C. (2008).
Algebraic stability indicators for ranked lists in molecular profiling. Bioinformatics 24, 258-264
Yang, X., Bentink, S., Scheid, S., Spang, R. (2006)
Similarities of ordered gene lists. Journal of Bioinformatics and Computational Biology 4, 693-708
Lottaz, C., Yang, X., Scheid, S., Spang, R. (2006)
OrderedList - a Bioconductor package for detecting similarity in ordered gene lists. Bioinformatics, 22, 2315-2316
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.