Description Slots Methods Author(s)
Object returned from a call to GeneSelector
.
final
:Numeric vector storing the final ranks as provided by the GeneSelector
procedure.
rankings
:Matrix of rankings used as input for the GeneSelector
.
inout
:Matrix arranged in the same way as rankmatrix
,
but information is now binary: If rankmatrix[i,j]
is smaller than the specified threshold,
then inout[i,j]
equals "+"
symbolizing selection,
whereas the "-"
symbolizes removal.
selected
:The indices of those genes that fall below
the specified threshold. Can more conveniently be accessed
using SelectedGenes
.
adjpval
:Numeric vector of adjusted p-values. NA
if
no adjustment has been performed.
maxrank
:Threshold rank, either predefined by the user or determined after p-value adjustment.
statistics
:The names of the ranking procedures used, ordered according to their importance as defined by the user.
Use show(object)
for brief information.
Use toplist(object, k=10)
to display the top k=10
genes according to the final ranking.
Use SelectedGenes(object)
to show all genes that
have been selected by the GeneSelector.
Use plot(object, which=1
to get detailed
information about the gene with index 1, arranged in
a pretty plot.
Martin Slawski
Anne-Laure Boulesteix
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