HMEC.chr22: Hi-C data from HMEC cell line - chromosome 22 at 500kb...

Description Usage Format Value Source

Description

A sparse upper triangular matrix containing the interacting regions and the corresponding Interaction Frequency (IF).

Usage

1

Format

A matrix with 2490 rows and 3 columns:

region1

The first interacting region - corresponds to the row name of a full Hi-C contact matrix

region2

The second interacting region - corresponds to the column name of a full Hi-C contact matrix

IF

The Interaction Frequency - number of read counts found for the interaction between region1 and region2

Value

A matrix

Source

Data from the Aiden Lab. See their website at http://www.aidenlab.org/ Or the the GEO link to download the data https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63525


HiCcompare documentation built on Nov. 8, 2020, 8:26 p.m.