HMEC.chr22: Hi-C data from HMEC cell line - chromosome 22 at 500kb...
In HiCcompare: HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets
Description
Usage
Format
Value
Source
Description
A sparse upper triangular matrix containing the interacting regions and
the corresponding Interaction Frequency (IF).
Usage
1
Format
A matrix with 2490 rows and 3 columns:
- region1
The first interacting region - corresponds to the
row name of a full Hi-C contact matrix
- region2
The second interacting region - corresponds to
the column name of a full Hi-C contact matrix
- IF
The Interaction Frequency - number of read counts
found for the interaction between region1 and region2
Value
A matrix
Source
Data from the Aiden Lab. See their website at
http://www.aidenlab.org/
Or the the GEO link to download the data
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63525
HiCcompare documentation built on Nov. 8, 2020, 8:26 p.m.
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Description Usage Format Value Source
Description
A sparse upper triangular matrix containing the interacting regions and the corresponding Interaction Frequency (IF).
Usage
1 |
Format
A matrix with 2490 rows and 3 columns:
- region1
The first interacting region - corresponds to the row name of a full Hi-C contact matrix
- region2
The second interacting region - corresponds to the column name of a full Hi-C contact matrix
- IF
The Interaction Frequency - number of read counts found for the interaction between region1 and region2
Value
A matrix
Source
Data from the Aiden Lab. See their website at http://www.aidenlab.org/ Or the the GEO link to download the data https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63525
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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