Files in HiCcompare
HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets

NEWS
DESCRIPTION
README.md
NAMESPACE
LICENSE
data/hmec.IS.rda
data/datalist
data/centromere_locations.rda
data/nhek.IS.rda
data/brain_table.rda
data/NHEK.chr22.rda
data/hg19_blacklist.rda
data/NHEK.chr10.rda
data/HMEC.chr22.rda
data/HMEC.chr10.rda
data/cooler.rda
data/hg38_blacklist.rda
man/remove_centromere.Rd man/HMEC.chr10.Rd man/create.hic.table.Rd man/plot_A.Rd man/total_sum.Rd man/full2sparse.Rd man/NHEK.chr10.Rd man/hic_simulate.Rd man/sparse2full.Rd man/weight_M.Rd man/hicpro2bedpe.Rd man/make_InteractionSet.Rd man/hic_diff.Rd man/hmec.IS.Rd man/get_CNV.Rd man/cooler.Rd man/HiCcompare-package.Rd man/hic_loess.Rd man/sim.other.methods.Rd man/hg38_blacklist.Rd man/split_centromere.Rd man/visualize_pvals.Rd man/MD.plot1.Rd man/cooler2sparse.Rd man/MD.plot2.Rd man/MA_norm.Rd man/SCN.Rd man/centromere_locations.Rd man/HMEC.chr22.Rd man/brain_table.Rd man/KRnorm.Rd man/NHEK.chr22.Rd man/nhek.IS.Rd man/hg19_blacklist.Rd R/plot_functions.R R/hmec.IS.R R/NHEK.chr10.R R/make_InteractionSet.R R/Cournac_normalization.R R/hic_loess.R R/matrix_transformations.R R/NHEK.chr22.R R/create_hic_table.R R/hg38_blacklist.R R/KRnormalization.R R/visualize_pvals.R R/nhek.IS.R R/hg19_blacklist.R R/MA_norm.R R/hicpro2bedpe.R R/brain_table.R R/hic_simulate.R R/HMEC.chr22.R R/remove_centromere.R R/volcano.R R/HiCcompare.r R/cooler.R R/hic_diff.R R/plot_A.R R/split_centromere.R R/weight_M.R R/HMEC.chr10.R R/centromere_locations.R R/get_CNV.R R/total_sum.R inst/doc/HiCcompare-vignette.R inst/doc/HiCcompare-vignette.Rmd
inst/doc/HiCcompare-vignette.html
vignettes/HiCcompare-vignette.Rmd tests/testthat.R tests/testthat/test_create_hic_table.R tests/testthat/test_pipeline_works.R tests/testthat/test_hic_loess_input.R tests/testthat/test_matrix_transformations.R
build/vignette.rds
HiCcompare documentation built on Nov. 17, 2017, 12:05 p.m.