KRnorm: Performs KR (Knight-Ruiz) normalization on a Hi-C matrix
In HiCcompare: HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets
Description
Usage
Arguments
Details
Value
Examples
View source: R/KRnormalization.R
Description
Performs KR (Knight-Ruiz) normalization on a Hi-C matrix
Usage
1
KRnorm(A)
Arguments
A
the matrix to be normalized - any columns/rows of
0's will be removed before being normalized.
Details
Performs KR normalization. The function is a translation
of the 'Matlab' code provided in the 2012 manuscript.
Knight PA, Ruiz D. A fast algorithm for matrix balancing. IMA
Journal of Numerical Analysis. Oxford University Press; 2012; drs019.
Value
A KR normalized matrix
Examples
1
2
HiCcompare documentation built on Nov. 8, 2020, 8:26 p.m.
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Description Usage Arguments Details Value Examples
View source: R/KRnormalization.R
Description
Performs KR (Knight-Ruiz) normalization on a Hi-C matrix
Usage
1 | KRnorm(A)
|
Arguments
A |
the matrix to be normalized - any columns/rows of 0's will be removed before being normalized. |
Details
Performs KR normalization. The function is a translation of the 'Matlab' code provided in the 2012 manuscript. Knight PA, Ruiz D. A fast algorithm for matrix balancing. IMA Journal of Numerical Analysis. Oxford University Press; 2012; drs019.
Value
A KR normalized matrix
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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