full2sparse: Transfrom a full Hi-C contact matrix to a sparse upper...
In HiCcompare: HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets
Description
Usage
Arguments
Value
Examples
View source: R/matrix_transformations.R
Description
Transfrom a full Hi-C contact matrix to a sparse upper triangular matrix
Usage
1
full2sparse(mat)
Arguments
mat
A matrix. Must have column names equal to the start location for
each bin. i.e. for a 6x6 Hi-C matrix where the first region starts at 0 kb and
the final region starts at 500KB and the resolution is 100kb, the column names
of the matrix should be as follows:
colnames(mat) = c(0, 100000, 200000, 300000, 400000, 500000)
Value
A sparse upper triangular matrix.
Examples
1
2
3
4
m <- matrix(1:100, 10, 10)
colnames(m) <- 1:10
sparse <- full2sparse(m)
sparse
HiCcompare documentation built on Nov. 8, 2020, 8:26 p.m.
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Description Usage Arguments Value Examples
View source: R/matrix_transformations.R
Description
Transfrom a full Hi-C contact matrix to a sparse upper triangular matrix
Usage
1 | full2sparse(mat)
|
Arguments
mat |
A matrix. Must have column names equal to the start location for each bin. i.e. for a 6x6 Hi-C matrix where the first region starts at 0 kb and the final region starts at 500KB and the resolution is 100kb, the column names of the matrix should be as follows: colnames(mat) = c(0, 100000, 200000, 300000, 400000, 500000) |
Value
A sparse upper triangular matrix.
Examples
1 2 3 4 | m <- matrix(1:100, 10, 10)
colnames(m) <- 1:10
sparse <- full2sparse(m)
sparse
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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