remove_centromere: Function to remove centromere columns and rows from a full...

Description Usage Arguments Value Examples

View source: R/remove_centromere.R

Description

Function to remove centromere columns and rows from a full Hi-C contact matrix

Usage

1

Arguments

mat

A full Hi-C matrix

Value

A list of (1) the column/row numbers of the centromere and (2) the Hi-c matrix with the centromere removed

Examples

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m <- matrix(rpois(100, 5), 10, 10)
m[5,] <- 0
m[,5] <- 0
remove_centromere(m)

HiCcompare documentation built on Nov. 8, 2020, 8:26 p.m.