make_InteractionSet: Convert HiCdiff results to InteractionSet object
In HiCcompare: HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets
Description
Usage
Arguments
Details
Value
Examples
View source: R/make_InteractionSet.R
Description
Convert HiCdiff results to InteractionSet object
Usage
1
make_InteractionSet(hic.table)
Arguments
hic.table
A hic.table object.
Details
This function will convert data from HiCdiff results in the
hic.table object format to the InteractionSet format which makes
use of GRanges objects.
Value
An object of class InteractionSet
Examples
1
2
3
4
5
6
# create hic.table
data(HMEC.chr22)
data(NHEK.chr22)
hic.table <- create.hic.table(HMEC.chr22, NHEK.chr22, chr='chr22')
# convert to InteractionSet
gi <- make_InteractionSet(hic.table)
HiCcompare documentation built on Nov. 8, 2020, 8:26 p.m.
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Description Usage Arguments Details Value Examples
View source: R/make_InteractionSet.R
Description
Convert HiCdiff results to InteractionSet object
Usage
1 | make_InteractionSet(hic.table)
|
Arguments
hic.table |
A hic.table object. |
Details
This function will convert data from HiCdiff results in the hic.table object format to the InteractionSet format which makes use of GRanges objects.
Value
An object of class InteractionSet
Examples
1 2 3 4 5 6 | # create hic.table
data(HMEC.chr22)
data(NHEK.chr22)
hic.table <- create.hic.table(HMEC.chr22, NHEK.chr22, chr='chr22')
# convert to InteractionSet
gi <- make_InteractionSet(hic.table)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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