Corr: The Corr class

In IdMappingAnalysis: ID Mapping Analysis

Description

Package: IdMappingAnalysis
Class Corr

Object
~~|
~~+--IdMapBase
~~~~~~~|
~~~~~~~+--Corr

Directly known subclasses:

public static class Corr
extends IdMapBase

Create the Corr object by performing correlations on the CorrData object using the correlation algorithm defined by the method argument. The Corr object encapsulates a data.frame containing three columns: the first two are unique pairs and the third is a correlation results with a column name reflecting the correlation method ('pearson', 'spearman' or 'kendall').

Usage

Corr(corrData=NULL, method="pearson", verbose=FALSE, ...)

Arguments

corrData	CorrData object on which correlation is performed or a data.frame compliant with the Corr object internal data frame format.
method	Correlation method ('pearson', 'spearman' or 'kendall'). Default is 'pearson'.
verbose	if TRUE enables diagnostic messages. Default is FALSE.
...	Not used.

Fields and Methods

Methods:

	getData	Extract correlation results from the Corr object.
	getUniquePairs	Extract unique pairs from the Corr object.
	plot	Plot the density distributions for correlation object(s).

Methods inherited from IdMapBase:
[, aligned, as.data.frame, dim, dimnames, getName, primaryIDs, primaryKey, secondaryKey

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Alex Lisovich, Roger Day

Examples

 corr<-Corr(examples$corrData,method="spearman",verbose=TRUE);
 class(corr);
 corr[1:10,];
 

IdMappingAnalysis documentation built on Oct. 31, 2019, 3:30 a.m.