DataFilter: The DataFilter class

In IdMappingAnalysis: ID Mapping Analysis

Description

Package: IdMappingAnalysis
Class DataFilter

Object
~~|
~~+--DataFilter

Directly known subclasses:

public static class DataFilter
extends Object

Serves as a wrapper for data data filtering functions define as static methods of the DataFilter class.

Usage

DataFilter()

Fields and Methods

Methods:

	do.apply	Filter experiment using constraints.
	fisherTransform	Compute the Fisher transform.
	fisherTransformInverse	Compute the Fisher inversed transform.
	fisherTransformJacobean	Compute the Fisher transform Jacobean.
	logTen	Compute log10 of a numerical vector combined with thresholding on minimum value.
	minAvgCountConstraint	Perform mean based thresholding of an input vector.
	minCountConstraint	Perform minimum count based thresholding of an input vector.
	minCountGroupConstraint	Perform minimum count based thresholding of an input vector subdivided into groups.
	removeNASeries	Remove NA series from the experiment set.

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Alex Lisovich, Roger Day

IdMappingAnalysis documentation built on Oct. 31, 2019, 3:30 a.m.