getCompoundGroups.IdMapDiffCounts: Get counts for each compound event in IdMapDiffCounts
In IdMappingAnalysis: ID Mapping Analysis

Description Usage Arguments Value Author(s) See Also Examples

Get counts for each compound event in IdMapDiffCounts. Used internally within IdMapDiffCounts$plot().

1 2	## S3 method for class 'IdMapDiffCounts' getCompoundGroups(this, verbose=FALSE, ...)

`verbose`	If `TRUE` enables diagnostic messages. Default is `FALSE`.
`...`	Not used

A list of data frames corresponding to a particular compaund event ('excess both', 'excess left' etc.) where each data frame has the same structure as a data frame within the IdMapDiffCounts object.

Alex Lisovich, Roger Day

For more information see IdMapDiffCounts.

 #create IdMapDiffCounts object
 IDs<-IdMapBase$primaryIDs(examples$msmsExperimentSet);
 jointIdMap<-JointIdMap(examples$identDfList,primaryIDs=IDs);
 diffs<-jointIdMap$getDiff("NetAffx_F","DAVID_Q",verbose=TRUE);
 diffCounts<-IdMapDiffCounts(diffs);

 # get compound events
 groups<-diffCounts$getCompoundGroups();
 names(groups);
 groups$excess.both[1:10,];
 groups$same.list[1:10,];