Description Usage Arguments Fields and Methods Author(s) Examples
Package: IdMappingAnalysis
Class JointIdMap
Object
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IdMapBase
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JointIdMap
Directly known subclasses:
public static class JointIdMap
extends IdMapBase
JointIdMap is an object encapsulating a data.frame
containing the primary ID set in a first column
while the rest of columns containing the sets of secondary IDs, each column
corresponding to a particular Id Map, keeping all Id Maps properly aligned
1 | JointIdMap(idMapList=list(), primaryIDs=NULL, name="", verbose=FALSE, ...)
|
idMapList |
The |
primaryIDs |
The optional |
name |
The optional name of a given JointIdMap object. Default is ” |
verbose |
if |
... |
Not used |
Methods:
as.data.frame | Retrieve a data frame encapsulated within the given JointIdMap object. | |
diffCounts.plot | Interactive wrapper for IdMapDiffCounts$plot. | |
ecdf.plot | Interactive wrapper for IdMapCounts$plot. | |
getCounts | Create an IdMapCounts object. | |
getDiff | Create an IdMapDiff object. | |
getIdMapList | Create an Id Map list from a JointIdMap object. | |
getMapNames | Get the names of IdMap objects encapsulated within the given JointIdMap object. | |
getMatchInfo | Get match table(s) for a given set of primary IDs. | |
getUnionIdMap | Create a union IdMap. | |
Methods inherited from IdMapBase:
[, aligned, as.data.frame, dim, dimnames, getName, primaryIDs, primaryKey, secondaryKey
Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Roger Day,Alex Lisovich
1 2 3 4 5 6 7 | jointIdMap<-JointIdMap(examples$identDfList);
jointIdMap$primaryKey();
jointIdMap$secondaryKey();
jointIdMap[1:10,];
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