getBootstrap.JointUniquePairs: Create Bootstrap object from JointUniquePairs object and two...

In IdMappingAnalysis: ID Mapping Analysis

Description

Creates Bootstrap object from JointUniquePairs object and two experiment sets optionally subsetting on a list of ID Maps from the JointUniquePairs object

Usage

## S3 method for class 'JointUniquePairs'
getBootstrap(this, expSet1, expSet2, groups=NULL, Fisher=FALSE, R=200, verbose=FALSE, ...)

Arguments

expSet1	First ExperimentSet object with primary IDs corresponding (partially intersecting) with primaryIDs of the given JointUniquePairs object.
expSet2	Second ExperimentSet object with primary IDs corresponding (partially intersecting) with secondaryIDs of the given JointUniquePairs object.
groups	If not NULL, defines the subset from UniquePairsMatch on which the full event group to be formed. Default is NULL.
Fisher	If TRUE, the Fisher transform of data is performed during the bootstrapping. Default is FALSE.
R	The number of bootstrap replicates. Default is 200.
verbose	If TRUE enables diagnostic messages. Default is FALSE.
...	Not used

Value

the Bootstrap object

Author(s)

Alex Lisovich, Roger Day

See Also

For more information see JointUniquePairs.

Examples

 #create data structure containing the  bootstrapping results (correlation and sd)
 bootstrap<-examples$jointUniquePairs$getBootstrap(examples$msmsExperimentSet,examples$mrnaExperimentSet,
		groups=c("NetAffx_Q","DAVID_Q","DAVID_F","EnVision_Q"),R=20,verbose=TRUE);
 bootstrap$plot();
 

IdMappingAnalysis documentation built on Oct. 31, 2019, 3:30 a.m.