primerAverage: Average expression values for duplicated/redundant genes
In MAST: Model-based Analysis of Single Cell Transcriptomics
Description
Usage
Arguments
Value
Note
View source: R/Fluidigm-methods.R
Description
Takes an average, potentially on a different scale given by fun.natural
of some genes. The average is then transformed with fun.cycle.
Usage
1
primerAverage(fd, geneGroups, fun.natural = expavg, fun.cycle = logshift)
Arguments
fd
SingleCellAssay or subclass
geneGroups
character naming a column in the featureData that keys the duplicates
fun.natural
transformation to be used to collapse the duplicate expression values
fun.cycle
transformation to be used after collapsing
Value
averaged version of fd.
Note
This code needs to be tested more extensively after a refactoring. Caveat calculator.
MAST documentation built on Nov. 8, 2020, 8:19 p.m.
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Description Usage Arguments Value Note
View source: R/Fluidigm-methods.R
Description
Takes an average, potentially on a different scale given by fun.natural
of some genes. The average is then transformed with fun.cycle.
Usage
1 | primerAverage(fd, geneGroups, fun.natural = expavg, fun.cycle = logshift)
|
Arguments
fd |
|
geneGroups |
|
fun.natural |
transformation to be used to collapse the duplicate expression values |
fun.cycle |
transformation to be used after collapsing |
Value
averaged version of fd.
Note
This code needs to be tested more extensively after a refactoring. Caveat calculator.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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