Description Usage Arguments Value See Also Examples

Returns a `data.table`

with a special print method that shows the top 2 most significant genes by contrast.
This `data.table`

contains columns:

- primerid
the gene

- component
C=continuous, D=discrete, logFC=log fold change, S=combined using Stouffer's method, H=combined using hurdle method

- contrast
the coefficient/contrast of interest

- ci.hi
upper bound of confidence interval

- ci.lo
lower bound of confidence interval

- coef
point estimate

- z
z score (coefficient divided by standard error of coefficient)

- Pr(>Chisq)
likelihood ratio test p-value (only if

`doLRT=TRUE`

)

Some of these columns will contain NAs if they are not applicable for a particular component or contrast.

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`object` |
A |

`logFC` |
If TRUE, calculate log-fold changes, or output from a call to |

`doLRT` |
if TRUE, calculate lrTests on each coefficient, or a character vector of such coefficients to consider. |

`level` |
what level of confidence coefficient to return. Defaults to 95 percent. |

`...` |
ignored |

`data.table`

print.summaryZlmFit

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