MCRestimate: Misclassification error estimation with cross-validation

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This package includes a function for combining preprocessing and classification methods to calculate misclassification errors

Author
Marc Johannes, Markus Ruschhaupt, Holger Froehlich, Ulrich Mansmann, Andreas Buness, Patrick Warnat, Wolfgang Huber, Axel Benner, Tim Beissbarth
Date of publication
None
Maintainer
Marc Johannes <m.johannes@dkfz.de>
License
GPL (>= 2)
Version
2.30.0

View on Bioconductor

Man pages

class.factor.format
A function for creating a factor from the phenoData slot of...
ClassifierBuild
Building a classifier as a combination of preprocessing and...
geneReduction
Variable selection and cluster functions
important.variable.names
Writing tables with variable information
indVotes
Individual Error of the outer cross-validations
intersectList
A function for creating a all possible intersects for a list...
MCRconfusion
Summary tables for MCRestimate objects
MCRestimate
Estimation of misclassification error by cross-validation
MCRestimateMerge
Merging objects of class MCRestimate
plot.MCRestimate
Plot method for a objects of class MCRestimate
PLR
A function which performs penalised logistic regression...
replace.NA
Replaces in a given numeric matrix NA values per row or per...
select.NA.elements
Selects NA values of a given numeric matrix
SVM.OVA.wrap
SVM with 'One-Versus-All' multiclass approach
wrapper.fkt
Wrapper function for different classification methods

Files in this package

MCRestimate/DESCRIPTION
MCRestimate/NAMESPACE
MCRestimate/R
MCRestimate/R/ClassifierBuild.R
MCRestimate/R/MCRconfusion.R
MCRestimate/R/MCRestimate.R
MCRestimate/R/MCRestimateMerge.R
MCRestimate/R/MCRwrongsamples.R
MCRestimate/R/SVM_OVA.R
MCRestimate/R/class.factor.format.R
MCRestimate/R/important.variable.names.R
MCRestimate/R/indVoteFunction.R
MCRestimate/R/intersectList.R
MCRestimate/R/logReg.R
MCRestimate/R/plot.MCRestimate.R
MCRestimate/R/print.MCRestimate.R
MCRestimate/R/selectionFunctions.R
MCRestimate/R/selectionFunctions3.R
MCRestimate/R/whatiscorrect.R
MCRestimate/R/wrapper.functions.R
MCRestimate/build
MCRestimate/build/vignette.rds
MCRestimate/inst
MCRestimate/inst/doc
MCRestimate/inst/doc/UsingMCRestimate.R
MCRestimate/inst/doc/UsingMCRestimate.Rnw
MCRestimate/inst/doc/UsingMCRestimate.pdf
MCRestimate/inst/scripts
MCRestimate/inst/scripts/MCRestimateBlueprint.Rnw
MCRestimate/inst/scripts/Template.R
MCRestimate/man
MCRestimate/man/ClassifierBuild.Rd
MCRestimate/man/MCRconfusion.Rd
MCRestimate/man/MCRestimate.Rd
MCRestimate/man/MCRestimateMerge.Rd
MCRestimate/man/PLR.Rd
MCRestimate/man/SVM.OVA.wrap.Rd
MCRestimate/man/class.factor.format.Rd
MCRestimate/man/geneReduction.Rd
MCRestimate/man/important.variable.names.Rd
MCRestimate/man/indVotes.Rd
MCRestimate/man/intersectList.Rd
MCRestimate/man/plot.MCRestimate.Rd
MCRestimate/man/replace.NA.Rd
MCRestimate/man/select.NA.elements.Rd
MCRestimate/man/wrapper.fkt.Rd
MCRestimate/vignettes
MCRestimate/vignettes/UsingMCRestimate.Rnw