ModuleFrequency: Statistics of all conditions

In MODA: MODA: MOdule Differential Analysis for weighted gene co-expression network

Description

Statistics of all conditions. To highlight conserved or condition-specific by counting how frequent each module is lablelled as which, and then visualize the frequency by bar plot.

Usage

ModuleFrequency(ResultFolder, intModules, conditionNames, legendNames,
  indicator)

Arguments

ResultFolder	where to store results
intModules	how many modules in the background network
conditionNames	a character vector, each of them is the name
legendNames	a character vector, each of them is the condition name showing up in the frequency barplot of condition. Or just single name
indicator	identifier of current profile, served as a tag in name

Value

None

Author(s)

Dong Li, [e-mail]

See Also

WeightedModulePartitionHierarchical, WeightedModulePartitionLouvain, WeightedModulePartitionSpectral, WeightedModulePartitionAmoutain, CompareAllNets

MODA documentation built on Nov. 8, 2020, 6:39 p.m.