NMImatrix: Illustration of network comparison by NMI
In MODA: MODA: MOdule Differential Analysis for weighted gene co-expression network

Description Usage Arguments Value Author(s) See Also

Compare the background network and a set of condition-specific network. returning a pair-wise matrix to show the normalized mutual information between each pair of networks in terms of partitioning

1 2	NMImatrix(ResultFolder, intModules, indicator, intconditionModules, conditionNames, Nsize, legendNames = NULL, plt = FALSE)

`ResultFolder`	where to store results
`intModules`	how many modules in the background network
`indicator`	identifier of current profile, served as a tag in name
`intconditionModules`	a numeric vector, each of them is the number of modules in each condition-specific network. Or just single number
`conditionNames`	a character vector, each of them is the name of condition. Or just single name
`Nsize`	The number of genes in total
`legendNames`	a character vector, each of them is the condition name showing up in the similarity matrix plot if applicable
`plt`	a boolean value to indicate whether plot the similarity matrix