R/TMT11.R

In MSnbase: Base Functions and Classes for Mass Spectrometry and Proteomics

TMT11 <- TMT11HCD <-
    new("ReporterIons",
        description = "11-plex TMT HCD",
        name = "TMT11HCD",
        reporterNames = c("126", "127N", "127C", "128N", "128C",
                          "129N", "129C", "130N", "130C", "131N",
                          "131C"),
        mz = c(126.127725, ## 126
               127.12476,  ## 127N
               127.131079, ## 127C
               128.128114, ## 128N
               128.134433, ## 128C
               129.131468, ## 129N
               129.137787, ## 129C
               130.134822, ## 130N
               130.141141, ## 130C               
               131.138176, ## 131N
               131.144499  ## 131C
               ),
        col = c("#8DD3C7", "#FFFFB3", "#BEBADA", "#FB8072", "#80B1D3",
                "#FDB462", "#B3DE69", "#FCCDE5", "#D9D9D9", "#BC80BD",
                "#CCEBC5"),
        width = 0.002)