API for MethylMix
MethylMix: Identifying methylation driven cancer genes
| Global functions | |
|---|---|
| BatchData | Man page |
| Beta.NA | Source code |
| ClusterProbes | Man page Source code |
| ComBat_NoFiles | Man page Source code |
| Download_DNAmethylation | Man page Source code |
| Download_GeneExpression | Man page Source code |
| GEcancer | Man page |
| GetData | Man page Source code |
| L | Source code |
| METcancer | Man page |
| METnormal | Man page |
| MethylMix | Man page Source code |
| MethylMix_MixtureModel | Man page Source code |
| MethylMix_ModelGeneExpression | Man page Source code |
| MethylMix_ModelSingleGene | Man page Source code |
| MethylMix_PlotModel | Man page Source code |
| MethylMix_Predict | Man page Source code |
| MethylMix_RemoveFlipOver | Man page Source code |
| Preprocess_CancerSite_Methylation27k | Man page Source code |
| Preprocess_CancerSite_Methylation450k | Man page Source code |
| Preprocess_DNAmethylation | Man page Source code |
| Preprocess_GeneExpression | Man page Source code |
| Preprocess_MAdata_Cancer | Man page Source code |
| Preprocess_MAdata_Normal | Man page Source code |
| ProbeAnnotation | Man page |
| SNPprobes | Man page |
| TCGA_BatchCorrection_MolecularData | Man page |
| TCGA_GENERIC_BatchCorrection | Man page Source code |
| TCGA_GENERIC_CheckBatchEffect | Man page Source code |
| TCGA_GENERIC_CleanUpSampleNames | Man page Source code |
| TCGA_GENERIC_GetSampleGroups | Man page Source code |
| TCGA_GENERIC_LoadIlluminaMethylationData | Man page Source code |
| TCGA_GENERIC_MET_ClusterProbes_Helper_ClusterGenes_with_hclust | Man page Source code |
| TCGA_GENERIC_MergeData | Man page Source code |
| TCGA_Load_MolecularData | Man page Source code |
| TCGA_Process_EstimateMissingValues | Man page Source code |
| aprior | Source code |
| betaEst_2 | Man page |
| blc_2 | Man page |
| bprior | Source code |
| build.design | Source code |
| combineForEachOutput | Man page Source code |
| design.mat | Source code |
| filter.absent | Source code |
| get_firehoseData | Man page Source code |
| int.eprior | Source code |
| it.sol | Source code |
| list.batch | Source code |
| postmean | Source code |
| postvar | Source code |
| predictOneGene | Man page Source code |
| trim.dat | Source code |
