API for MethylMix
MethylMix: Identifying methylation driven cancer genes

Global functions
BatchData Man page
Beta.NA Source code
ClusterProbes Man page Source code
ComBat_NoFiles Man page Source code
Download_DNAmethylation Man page Source code
Download_GeneExpression Man page Source code
GEcancer Man page
GetData Man page Source code
L Source code
METcancer Man page
METnormal Man page
MethylMix Man page Source code
MethylMix_MixtureModel Man page Source code
MethylMix_ModelGeneExpression Man page Source code
MethylMix_ModelSingleGene Man page Source code
MethylMix_PlotModel Man page Source code
MethylMix_Predict Man page Source code
MethylMix_RemoveFlipOver Man page Source code
Preprocess_CancerSite_Methylation27k Man page Source code
Preprocess_CancerSite_Methylation450k Man page Source code
Preprocess_DNAmethylation Man page Source code
Preprocess_GeneExpression Man page Source code
Preprocess_MAdata_Cancer Man page Source code
Preprocess_MAdata_Normal Man page Source code
ProbeAnnotation Man page
SNPprobes Man page
TCGA_BatchCorrection_MolecularData Man page Source code
TCGA_GENERIC_BatchCorrection Man page Source code
TCGA_GENERIC_CheckBatchEffect Man page Source code
TCGA_GENERIC_CleanUpSampleNames Man page Source code
TCGA_GENERIC_GetSampleGroups Man page Source code
TCGA_GENERIC_LoadIlluminaMethylationData Man page Source code
TCGA_GENERIC_MET_ClusterProbes_Helper_ClusterGenes_with_hclust Man page Source code
TCGA_GENERIC_MergeData Man page Source code
TCGA_Load_MolecularData Man page Source code
TCGA_Process_EstimateMissingValues Man page Source code
aprior Source code
betaEst_2 Man page Source code
blc_2 Man page Source code
bprior Source code
build.design Source code
combineForEachOutput Man page Source code
design.mat Source code
filter.absent Source code
get_firehoseData Man page Source code
int.eprior Source code
it.sol Source code
list.batch Source code
postmean Source code
postvar Source code
predictOneGene Man page Source code
trim.dat Source code
MethylMix documentation built on Nov. 1, 2018, 5:04 a.m.