TCGA_Load_MolecularData: The TCGA_Load_MolecularData function

In MethylMix: MethylMix: Identifying methylation driven cancer genes

Description

Internal. Reads in gene expressiondata. Deletes samples and genes with more NAs than the respective thresholds. Imputes other NAs values.

Usage

TCGA_Load_MolecularData(Filename, MissingValueThresholdGene = 0.3,
  MissingValueThresholdSample = 0.1)

Arguments

Filename	name of the file with the data.
MissingValueThresholdGene	threshold for missing values per gene. Genes with a percentage of NAs greater than this threshold are removed. Default is 0.3.
MissingValueThresholdSample	threshold for missing values per sample. Samples with a percentage of NAs greater than this threshold are removed. Default is 0.1.

Value

gene expression data.

MethylMix documentation built on Nov. 8, 2020, 11:08 p.m.