Preprocess_MAdata_Normal: The Preprocess_MAdata_Normal function

Description Usage Arguments Value

View source: R/Download_Preprocess.R

Description

Internal. Pre-process gene expression data for normal samples.

Usage

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Preprocess_MAdata_Normal(CancerSite, Directory, File,
  MissingValueThresholdGene = 0.3, MissingValueThresholdSample = 0.1)

Arguments

CancerSite

TCGA code for the cancer site.

Directory

Directory.

File

File.

MissingValueThresholdGene

threshold for missing values per gene. Genes with a percentage of NAs greater than this threshold are removed. Default is 0.3.

MissingValueThresholdSample

threshold for missing values per sample. Samples with a percentage of NAs greater than this threshold are removed. Default is 0.1.

Value

The data matrix.


MethylMix documentation built on May 6, 2019, 2:08 a.m.