Preprocess_CancerSite_Methylation27k: The Preprocess_CancerSite_Methylation27k function

Description Usage Arguments Value

View source: R/Download_Preprocess.R

Description

Internal. Pre-processes DNA methylation data from TCGA from Illymina 27k arrays.

Usage

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Preprocess_CancerSite_Methylation27k(CancerSite, METdirectory,
  MissingValueThreshold = 0.2)

Arguments

CancerSite

character of length 1 with TCGA cancer code.

METdirectory

character with directory where a folder for downloaded files will be created. Can be the object returned by the Download_DNAmethylation function.

MissingValueThreshold

threshold for removing samples or genes with missing values.

Value

List with pre processed methylation data for cancer and normal samples.


MethylMix documentation built on Nov. 8, 2020, 11:08 p.m.