Man pages for MethylMix
MethylMix: Identifying methylation driven cancer genes
| BatchData | BatchData data set |
| betaEst_2 | The betaEst_2 function |
| blc_2 | The blc_2 function |
| ClusterProbes | The ClusterProbes function |
| ComBat_NoFiles | The ComBat_NoFiles function |
| combineForEachOutput | The combineForEachOutput function |
| Download_DNAmethylation | The Download_DNAmethylation function |
| Download_GeneExpression | The Download_GeneExpression function |
| GEcancer | Cancer Gene expression data of glioblastoma patients from the... |
| GetData | The GetData function |
| get_firehoseData | The get_firehoseData function |
| METcancer | DNA methylation data from cancer tissue from glioblastoma... |
| MethylMix | MethylMix: Mixture model for DNA methylation data in cancer. |
| MethylMix_MixtureModel | The MethylMix_MixtureModel function |
| MethylMix_ModelGeneExpression | The MethylMix_ModelGeneExpression function |
| MethylMix_ModelSingleGene | The MethylMix_ModelSingleGene function |
| MethylMix_PlotModel | The MethylMix_PlotModel function. |
| MethylMix_Predict | The MethylMix_Predict function |
| MethylMix_RemoveFlipOver | The MethylMix_RemoveFlipOver function |
| METnormal | DNA methylation data from normal tissue from glioblastoma... |
| predictOneGene | The predictOneGene function |
| Preprocess_CancerSite_Methylation27k | The Preprocess_CancerSite_Methylation27k function |
| Preprocess_CancerSite_Methylation450k | The Preprocess_CancerSite_Methylation450k function |
| Preprocess_DNAmethylation | The Preprocess_DNAmethylation function |
| Preprocess_GeneExpression | The Preprocess_GeneExpression function |
| Preprocess_MAdata_Cancer | The Preprocess_MAdata_Cancer function |
| Preprocess_MAdata_Normal | The Preprocess_MAdata_Normal function |
| ProbeAnnotation | ProbeAnnotation data set |
| SNPprobes | SNPprobes data set |
| TCGA_BatchCorrection_MolecularData | The TCGA_BatchCorrection_MolecularData function |
| TCGA_GENERIC_BatchCorrection | The TCGA_GENERIC_BatchCorrection function |
| TCGA_GENERIC_CheckBatchEffect | The TCGA_GENERIC_CheckBatchEffect function |
| TCGA_GENERIC_CleanUpSampleNames | The TCGA_GENERIC_CleanUpSampleNames function |
| TCGA_GENERIC_GetSampleGroups | The TCGA_GENERIC_GetSampleGroups function |
| TCGA_GENERIC_LoadIlluminaMethylationData | The TCGA_GENERIC_LoadIlluminaMethylationData function |
| TCGA_GENERIC_MergeData | The TCGA_GENERIC_MergeData function |
| TCGA_GENERIC_MET_ClusterProbes_Helper_ClusterGenes_with_hclust | The... |
| TCGA_Load_MolecularData | The TCGA_Load_MolecularData function |
| TCGA_Process_EstimateMissingValues | The TCGA_Process_EstimateMissingValues function |
