MulCom Parameter Optimization

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Description

Function to optimize Mulcom parameter for maximim nuber of genes with a user defined FDR

Usage

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   mulOptPars(opt, ind, ths) 

Arguments

opt

an MulCom optimization object

ind

index corresponding to the comparison

ths

a threshold for the FDR optimization, default is 0.05

Details

mulOptPars MulCom optimization function to identify best parameters

Author(s)

Claudio Isella, claudio.isella@ircc.it

Examples

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data(benchVign)
mulcom_perm <- mulPerm(Affy, Affy$Groups, 10, 7)
#mulcom_opt <- mulOpt(mulcom_perm, seq(0.1, 0.5, 0.1), seq(1, 3, 0.1))
#optThs <- mulOptPars(mulcom_opt, 1, 0.05)