mulOptPars: MulCom Parameter Optimization

In Mulcom: Calculates Mulcom test

Description

Function to optimize Mulcom parameter for maximim nuber of genes with a user defined FDR

Usage

   mulOptPars(opt, ind, ths) 

Arguments

opt	an MulCom optimization object
ind	index corresponding to the comparison
ths	a threshold for the FDR optimization, default is 0.05

Details

mulOptPars MulCom optimization function to identify best parameters

Author(s)

Claudio Isella, [e-mail]

Examples

data(benchVign)
mulcom_perm <- mulPerm(Affy, Affy$Groups, 10, 7)
#mulcom_opt <- mulOpt(mulcom_perm, seq(0.1, 0.5, 0.1), seq(1, 3, 0.1))
#optThs <- mulOptPars(mulcom_opt, 1, 0.05)

Mulcom documentation built on Nov. 8, 2020, 5:53 p.m.