MULCOM_P: Class MulCom Permutation

In Mulcom: Calculates Mulcom test

Description

This is a class representation MulCom test scores permutation

Objects from the Class

Objects can be created using the function mulScores on ExpressionSet.

Slots

FC:

Object of class numeric representing delta between all experimental groups and the reference groups

MSE_Corrected:

Object of class numeric representing the MulCom test estimation of mean square error as described in the formula of the Dunnett's t-test

FCp:

Object of class numeric representing delta between all experimental groups and the reference groups in permutated data

MSE_Correctedp:

Object of class numeric representing the MulCom test estimation of mean square error as described in the formula of the Dunnett's t-test in permutated data

Author(s)

Claudio Isella

Examples

data(benchVign)
mulcom_scores <- mulScores(Affy, Affy$Groups)

Example output

Loading required package: fields
Loading required package: spam
Loading required package: dotCall64
Loading required package: grid
Spam version 2.2-2 (2019-03-07) is loaded.
Type 'help( Spam)' or 'demo( spam)' for a short introduction 
and overview of this package.
Help for individual functions is also obtained by adding the
suffix '.spam' to the function name, e.g. 'help( chol.spam)'.

Attaching package: 'spam'

The following objects are masked from 'package:base':

    backsolve, forwardsolve

Loading required package: maps
See https://github.com/NCAR/Fields for
 an extensive vignette, other supplements and source code 
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:spam':

    cbind, colMeans, colSums, rbind, rowMeans, rowSums

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Mulcom documentation built on Nov. 8, 2020, 5:53 p.m.