mulCalc: MulCom Calculation

In Mulcom: Calculates Mulcom test

Description

Calculates MulCom test score for given m and t parameters

Usage

mulCalc(Mulcom_P, m, t)

Arguments

Mulcom_P	an object of class MULCOM
m	m: a numeric value corresponding to log 2 ratio correction for MulCom Test
t	t: a numeric value corresponding to T values for MulCom Test

Details

mulCalc Calculate the Mulcom Score with m and t defined by the user

Mulcom_P:

an object of class MULCOM_P

m:

a number corresponding to log 2 ratio correction for MulCom Test

t:

a number corresponding to T values for MulCom Test

Author(s)

Claudio Isella, [e-mail]

Examples

data(benchVign)
mulcom_scores <- mulScores(Affy, Affy$Groups)
mulcom_calc <- mulCalc(mulcom_scores, 0.2, 2)

Example output

Loading required package: fields
Loading required package: spam
Loading required package: dotCall64
Loading required package: grid
Spam version 2.2-2 (2019-03-07) is loaded.
Type 'help( Spam)' or 'demo( spam)' for a short introduction 
and overview of this package.
Help for individual functions is also obtained by adding the
suffix '.spam' to the function name, e.g. 'help( chol.spam)'.

Attaching package: 'spam'

The following objects are masked from 'package:base':

    backsolve, forwardsolve

Loading required package: maps
See https://github.com/NCAR/Fields for
 an extensive vignette, other supplements and source code 
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:spam':

    cbind, colMeans, colSums, rbind, rowMeans, rowSums

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Mulcom documentation built on Nov. 8, 2020, 5:53 p.m.