mulOptPlot: MulCom optimization Plot

In Mulcom: Calculates Mulcom test

Description

MulCom optimization Plot to identify best configuration paramters

Usage

   mulOptPlot(M.Opt, ind, th, smooth = "NO") 

Arguments

M.Opt	an MulCom optimization object
ind	index corresponding to the comparison to plot
th	a threshold for the FDR plot
smooth	indicates whether the FDR plot will show a significant threshold or will be continuous.

Details

mulOptPlot MulCom optimization Plot

Value

a numeric vector

Author(s)

Claudio Isella, [e-mail]

Examples

   data(benchVign)
   mulcom_perm <- mulPerm(Affy, Affy$Groups, 10,2)
   mulcom_opt <- mulOpt(mulcom_perm, vm=seq(0.1, 0.5, 0.1), vt=seq(1, 3,1))
   mulOptPlot(mulcom_opt, 1, 0.05)

Mulcom documentation built on Nov. 8, 2020, 5:53 p.m.