MulCom optimization Plot

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Description

MulCom optimization Plot to identify best configuration paramters

Usage

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   mulOptPlot(M.Opt, ind, th, smooth = "NO") 

Arguments

M.Opt

an MulCom optimization object

ind

index corresponding to the comparison to plot

th

a threshold for the FDR plot

smooth

indicates whether the FDR plot will show a significant threshold or will be continuous.

Details

mulOptPlot MulCom optimization Plot

Value

a numeric vector

Author(s)

Claudio Isella, claudio.isella@ircc.it

Examples

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   data(benchVign)
   mulcom_perm <- mulPerm(Affy, Affy$Groups, 10,2)
   mulcom_opt <- mulOpt(mulcom_perm, vm=seq(0.1, 0.5, 0.1), vt=seq(1, 3,1))
   mulOptPlot(mulcom_opt, 1, 0.05)