| Global functions | |
|---|---|
| .omnipath_options_defaults | Man page | 
| .onLoad | Source code | 
| OmnipathR | Man page | 
| cast_logicals | Source code | 
| count_references | Source code | 
| count_resources | Source code | 
| format_graph_edges | Source code | 
| get_annotation_databases | Man page | 
| get_annotation_resources | Man page | 
| get_complex_genes | Man page Source code | 
| get_complex_resources | Man page | 
| get_complexes_databases | Man page | 
| get_enzsub_resources | Man page | 
| get_interaction_databases | Man page | 
| get_interaction_resources | Man page | 
| get_intercell_categories | Man page | 
| get_intercell_classes | Man page | 
| get_intercell_generic_categories | Man page | 
| get_intercell_resources | Man page | 
| get_ptms_databases | Man page | 
| get_resources | Man page | 
| get_signed_ptms | Man page Source code | 
| import_AllInteractions | Man page | 
| import_KinaseExtra_Interactions | Man page | 
| import_LigrecExtra_Interactions | Man page | 
| import_OmniPath_Interactions | Man page | 
| import_OmniPath_PTMS | Man page | 
| import_OmniPath_annotations | Man page | 
| import_OmniPath_complexes | Man page | 
| import_OmniPath_intercell | Man page | 
| import_Omnipath_Interactions | Man page | 
| import_Omnipath_PTMS | Man page | 
| import_Omnipath_annotations | Man page | 
| import_Omnipath_complexes | Man page | 
| import_Omnipath_intercell | Man page | 
| import_PathwayExtra_Interactions | Man page | 
| import_TFregulons_Interactions | Man page | 
| import_all_interactions | Man page | 
| import_dorothea_interactions | Man page | 
| import_intercell_network | Man page | 
| import_kinaseextra_interactions | Man page | 
| import_ligrecextra_interactions | Man page | 
| import_lncrna_mrna_interactions | Man page | 
| import_miRNAtarget_Interactions | Man page | 
| import_mirnatarget_interactions | Man page | 
| import_omnipath | Source code | 
| import_omnipath_annotations | Man page | 
| import_omnipath_complexes | Man page | 
| import_omnipath_enzsub | Man page | 
| import_omnipath_interactions | Man page | 
| import_omnipath_intercell | Man page | 
| import_pathwayextra_interactions | Man page | 
| import_post_translational_interactions | Man page | 
| import_tf_mirna_interactions | Man page | 
| import_tf_target_interactions | Man page | 
| import_tfregulons_interactions | Man page | 
| import_transcriptional_interactions | Man page | 
| interaction_graph | Man page Source code | 
| omnipath_check_param | Source code | 
| omnipath_check_result | Source code | 
| omnipath_url | Source code | 
| omnipath_url_add_param | Source code | 
| pivot_annotations | Man page | 
| printPath_es | Man page Source code | 
| printPath_vs | Man page Source code | 
| print_interactions | Man page Source code | 
| print_path_es | Man page Source code | 
| print_path_vs | Man page Source code | 
| ptms_graph | Man page Source code | 
| split_apply | Source code | 
| split_unique_join | Source code | 
| strip_resource_labels | Source code | 
| swap_undirected | Source code | 
| unique_nodeSeq | Source code | 
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