Man pages for OmnipathR
Import Omnipath network

get_annotation_databasesGet the different annotation databases integrated in Omnipath
get_complexes_databasesGet the different complexes databases integrated in Omnipath
get_complex_genesGet all the molecular complexes for a given gene(s)
get_interaction_databasesGet the different interaction databases
get_intercell_categoriesGet the different intercell categories described in Omnipath
get_ptms_databasesGet Post-translational modification (PTMs) databases
get_signed_ptmsget signs for ptms interactions
import_AllInteractionsImports from Omnipath webservice all the available...
import_KinaseExtra_InteractionsImports from Omnipath webservice the interactions from...
import_LigrecExtra_InteractionsImports from Omnipath webservice the interactions from...
import_miRNAtarget_InteractionsImports from Omnipath webservice the interactions from...
import_Omnipath_annotationsImport Omnipath Annotations
import_Omnipath_complexesImport Omnipath Complexes
import_Omnipath_InteractionsImport Omnipath interaction database
import_Omnipath_intercellImport Omnipath Intercell Data
import_Omnipath_PTMSImport Omnipath post-translational modifications (PTMs)
import_PathwayExtra_InteractionsImports from Omnipath webservice the interactions from...
import_TFregulons_InteractionsImports from Omnipath webservice the interactions from...
interaction_graphBuild Omnipath interaction graph
OmnipathRThe OmnipathR package
print_interactionsprint interactions
printPath_esprint network paths given by edge sequence
printPath_vsprint networks paths given by node sequence
ptms_graphPost-translational modifications (PTMs) graph
OmnipathR documentation built on Oct. 31, 2019, 6:52 a.m.