print_path_vs: print networks paths given by node sequence

In OmnipathR: OmniPath web service client

Description

Prints the interactions in the path in a nice format.

Usage

print_path_vs(nodeSeq, G)

printPath_vs(...)

Arguments

nodeSeq	node sequence
G	igraph object (from ptms or interactions)
...	Passed to print_path_vs.

Value

Interactions displayed in a nice format

See Also

print_path_es

Examples

interactions = import_omnipath_interactions(resources=c("SignaLink3"))
OPI_g = interaction_graph(interactions = interactions )
print_path_vs(
    all_shortest_paths(
        OPI_g,
        from = "TYRO3",
        to = "STAT3"
    )$vpath,
    OPI_g
)
ptms = import_omnipath_enzsub(resources=c("PhosphoSite", "SIGNOR"))
ptms_g = ptms_graph(ptms)
print_path_vs(
    all_shortest_paths(
        ptms_g,
        from = "SRC",
        to = "STAT1"
    )$res,
    ptms_g
)

OmnipathR documentation built on Nov. 8, 2020, 8:10 p.m.