interaction_graph: Build Omnipath interaction graph

In OmnipathR: OmniPath web service client

Description

transforms the interactions data.frame to an igraph object

Usage

interaction_graph(interactions = interactions)

Arguments

interactions

data.frame created by import_omnipath_interactions, import_pathwayextra_interactions, import_kinaseextra_interactions, import_ligrecextra_interactions, import_dorothea_interactions, import_mirnatarget_interactions or import_all_interactions

Value

An igraph object

See Also

import_omnipath_interactions, import_pathwayextra_interactions, import_kinaseextra_interactions, import_ligrecextra_interactions, import_dorothea_interactions, import_mirnatarget_interactions or import_all_interactions

Examples

interactions = import_omnipath_interactions(resources=c("SignaLink3"))
OPI_g = interaction_graph(interactions)

OmnipathR documentation built on Nov. 8, 2020, 8:10 p.m.