Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.
|Bioconductor views||GeneExpression ImmunoOncology RNASeq Sequencing StatisticalMethod|
|Maintainer||Ning Leng <[email protected]>|
|Package repository||View on Bioconductor|
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