Oscope: Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq
Version 1.6.0

Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.

Package details

AuthorNing Leng
Bioconductor views GeneExpression RNASeq Sequencing StatisticalMethod
MaintainerNing Leng <lengning1@gmail.com>
LicenseArtistic-2.0
Version1.6.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("Oscope")

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Oscope documentation built on May 31, 2017, 10:54 a.m.