Oscope: Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq

Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.

Install the latest version of this package by entering the following in R:
AuthorNing Leng
Bioconductor views GeneExpression RNASeq Sequencing StatisticalMethod
Date of publicationNone
MaintainerNing Leng <lengning1@gmail.com>

View on Bioconductor


AbsCor Man page
CalcMV Man page
FlagCluster Man page
FormatSineOut Man page
ImpShift Man page
NISFun Man page
NormForSine Man page
Opt2Shift Man page
Oscope Man page
OscopeENI Man page
OscopeExampleData Man page
OscopeKM Man page
Oscope-package Man page
OscopeSine Man page
PermuCut Man page
PipeR Man page
PipeShiftCDF Man page
scanK Man page
SineFun Man page
SineOptim Man page

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