Oscope: Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq
Version 1.10.0

Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.

Package details

AuthorNing Leng
Bioconductor views GeneExpression RNASeq Sequencing StatisticalMethod
MaintainerNing Leng <[email protected]>
Package repositoryView on Bioconductor
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Oscope documentation built on May 2, 2018, 4:41 a.m.