AbsCor: Calculate absolute correlations among gene pairs

In Oscope: Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq

Description

Calculate absolute correlations among gene pairs

Usage

AbsCor(DataIn, method="pearson", diagNA=TRUE)

Arguments

DataIn	input data, gene-by-sample matrix
method	"pearson" or "spearman"; default is "pearson"
diagNA	whether replace diagonal values to NA's

Value

Output is a gene-by-gene matrix; the i, j th entry shows the absolute correlation of the ith and jth gene.

Author(s)

Ning Leng

Examples

AbsCor(matrix(rnorm(10),ncol=5))

Oscope documentation built on Nov. 8, 2020, 7:12 p.m.