OscopeExampleData: Simulated gene level data set with 600 genes and 30 cells.

In Oscope: Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq

Description

Simulated gene expression to evaluate Oscope. 600 genes and 30 cell are simulated. The expression mean of the genes are randomly simulated in the range of 10-10000.

Format

GeneExampleData is a matrix with 600 genes (rows) and 30 cells (columns).

Examples

data(OscopeExampleData)
str(OscopeExampleData)

Example output

Loading required package: EBSeq
Loading required package: blockmodeling
Loading required package: gplots

Attaching package: 'gplots'

The following object is masked from 'package:stats':

    lowess

Loading required package: testthat
Loading required package: cluster
Loading required package: BiocParallel
 num [1:500, 1:30] 982 1038 901 1524 895 ...
 - attr(*, "dimnames")=List of 2
  ..$ : chr [1:500] "g1" "g2" "g3" "g4" ...
  ..$ : chr [1:30] "S1" "S2" "S3" "S4" ...

Oscope documentation built on Nov. 8, 2020, 7:12 p.m.