Oscope-package: Oscope - A statistical pipeline for identifying oscillatory...
In Oscope: Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq
Description
Details
Author(s)
References
Description
Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles
of oscillating genes in an unsynchronized single cell RNA-seq experiment.
The Oscope pipeline includes three modules: a sine model module to search for
candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators
into groups; and an extended nearest insertion module to recover the base cycle order
for each oscillator group.
Details
Package: Oscope
Type: Package
Version: 0.99.0
Date: 2015-7-27
License: Artistic-2.0
Author(s)
Ning Leng
Maintainer: Ning Leng <lengning1@gmail.com>
References
Leng et al. Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq, accepted
Oscope documentation built on Nov. 8, 2020, 7:12 p.m.
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Description Details Author(s) References
Description
Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.
Details
| Package: | Oscope |
| Type: | Package |
| Version: | 0.99.0 |
| Date: | 2015-7-27 |
| License: | Artistic-2.0 |
Author(s)
Ning Leng
Maintainer: Ning Leng <lengning1@gmail.com>
References
Leng et al. Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq, accepted
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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