PipeR: Calculate residual of polynomial fit

In Oscope: Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq

Description

Calculate residual of polynomial fit

Usage

PipeR(Data,Ndg=3,Method="Poly")

Arguments

Data	gene-by-sample matrix or isoform-by-sample matrix.It should be rescaled to values bwteen [-1,1].
Ndg	degree of polynomial.
Method	only polynomial fitting ("Poly") is available now.

Value

The function will fit polynomial curve to each row of the data. The output returns the MSE of each row (gene/isoform).

Author(s)

Ning Leng

Examples

aa <- sin(seq(0,1,.1))
bb <- sin(seq(0.5,1.5,.1))
cc <- sin(seq(0.9,1.9,.1))
res <- PipeR(rbind(aa,bb,cc))

Oscope documentation built on Nov. 8, 2020, 7:12 p.m.