NormForSine: Rescale the gene/isoform expression matrix
In Oscope: Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq

Rescale the gene/isoform expression matrix

1	NormForSine(Data, qt1=.05, qt2=.95)

`Data`	input gene-by-sample matrix or isoform-by-sample matrix
`qt1,qt2`	thresholds for outlier adjustment. For each gene/isoform, values <= qt1 th quantile (>= qt2 th quantile) will be pushed to qt1 th quantile (qt2 th quantile) prior to the scaling. default values are 0.05 and 0.95.

The output will be a gene-by-sample or isoform-by-sample matrix. For each gene/isoform, the expressions will be scaled linearly to [-1,1]

Ning Leng

1	NormForSine(matrix(rnorm(10), nrow=2))

Oscope documentation built on Nov. 8, 2020, 7:12 p.m.

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