Man pages for PANR
Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations
| assoScore | Association scores for gene pairs |
| BetaMixture-class | An S4 class for beta mixture modelling of functional gene... |
| buildPAN | Build an igraph or RedeR graph for PAN |
| cosineSim | Compute cosine similarities or distances between pairs of... |
| data-Bakal2007 | Rich morphological phenotypes for gene overexpression and RNA... |
| edgeWeight | Compute edge weights for posterior association networks |
| exportPAN | Export inferred PAN or module graphs to files |
| fitBM | Fit a three-beta mixture model to densities of functional... |
| fitNULL | Fit the NULL component of a three-beta mixture model for... |
| infer | Infer a posterior association network |
| p2SNR | Translate p-values to Signal-to-Noise Ratios |
| PAN-class | An S4 class for inferring a posterior association network |
| permNULL | Do permutations for input rich phenotyping screens. |
| pvclustModule | Search enriched functional gene modules by pvclust |
| sigModules | Retrieve ids for significant gene modules searched by pvclust |
| SNR2p | Translate p-values to Signal-to-Noise Ratios |
| summarize | Summarize the object of S4 class 'BetaMixture' or 'PAN' |
| view | View the results of beta-mixture model fitting |
| viewLegend | View the legends for the graph built for PAN |
| viewNestedModules | View the nested modules in a posterior association network in... |
| viewPAN | Show posterior association networks or modules in 'igraph' or... |
