API for PCpheno
Phenotypes and cellular organizational units
| Global functions | |
|---|---|
| CoHyperGParams-class | Man page |
| CoHyperGResult-class | Man page |
| Dudley | Man page |
| DudleyGenelist | Man page |
| DudleyPhenoFull | Man page |
| DudleyPhenoM | Man page |
| DudleySign | Man page |
| Dudleyresult | Man page |
| GiaeverExpCdt | Man page |
| GiaeverGene | Man page |
| GiaeverPheno | Man page |
| Giaeverresult | Man page |
| HI | Man page |
| HyperGParams-class | Man page |
| KEGG2SCISI | Man page Source code |
| KastenmayerRaw | Man page |
| LesageRaw | Man page |
| OsterbergRaw | Man page |
| PCpheno | Man page |
| PCpheno-package | Man page |
| SGDphenoL | Man page |
| YEASTOHNOLOG | Man page |
| annotatePC | Source code |
| annotation,HyperGParams-method | Man page |
| buildFDMat | Man page Source code |
| categoryName | Man page |
| categoryName,HyperGParams-method | Man page |
| categoryToEntrezBuilder | Man page |
| categoryToEntrezBuilder,CoHyperGParams-method | Man page |
| complexStatus | Man page Source code |
| conditional | Man page |
| conditional,HyperGParams-method | Man page |
| conditional<- | Man page |
| deResult-class | Man page |
| densityEstimate | Man page Source code |
| expectedCounts,CoHyperGResult-method | Man page |
| geneCounts,CoHyperGResult-method | Man page |
| geneIds,HyperGParams-method | Man page |
| geneIds<- | Man page |
| geneIds<-,HyperGParams,logical-method | Man page |
| geneIds<-,HyperGParams-method | Man page |
| getCompToEntrezMap | Source code |
| getDescr | Man page Source code |
| getFDgene | Man page Source code |
| graphTheory | Man page Source code |
| gtResult-class | Man page |
| hyperGTest,CoHyperGParams-method | Man page |
| isConditional | Man page |
| isConditional,HyperGParams-method | Man page |
| list2matrix | Source code |
| logistPheno | Source code |
| oddsRatios,CoHyperGResult-method | Man page |
| ontology | Man page |
| ontology,HyperGParams-method | Man page |
| ontology<- | Man page |
| overlap | Man page Source code |
| plot | Man page |
| plot,deResult,missing-method | Man page |
| plot,deResult-method | Man page |
| plot,gtResult,missing-method | Man page |
| plot,gtResult-method | Man page |
| ppiInteract | Man page Source code |
| pvalueCutoff,HyperGParams-method | Man page |
| pvalueCutoff<- | Man page |
| pvalueCutoff<-,HyperGParams-method | Man page |
| pvalues,CoHyperGResult-method | Man page |
| reduceM | Man page Source code |
| summary,CoHyperGResult-method | Man page |
| summaryMap | Source code |
| testDirection,HyperGParams-method | Man page |
| testDirection<- | Man page |
| testDirection<-,HyperGParams-method | Man page |
| testResult-class | Man page |
| truncName | Man page Source code |
| universeBuilder,CoHyperGParams-method | Man page |
| universeCounts,CoHyperGResult-method | Man page |
| universeGeneIds | Man page |
| universeGeneIds,HyperGParams-method | Man page |
