categoryToEntrezBuilder: Return a list mapping multi-protein complexes IDs to YEAST...
In PCpheno: Phenotypes and cellular organizational units

Description Usage Arguments Details Value Author(s) See Also Examples

Return a list mapping multi-protein complexes (category) IDs to the YEAST ids annotated at the category id.

1 2	## S4 method for signature 'CoHyperGParams' categoryToEntrezBuilder(p)

`p`	A subclass of `HyperGParams-class`

End users should not call this directly. This method gets called from hyperGTest. To add support for a new category, a new method for this generic must be defined. Its signature should match a subclass of HyperGParams-class appropriate for the new category.

A list mapping category IDs to YEAST identifiers.

S. Falcon and N. LeMeur

hyperGTest CoHyperGParams-class

data(ScISIC)
data(essglist)
essential <- names(essglist)

params <- new("CoHyperGParams",
              geneIds=essential, 
              universeGeneIds=rownames(ScISIC),
              annotation="org.Sc.sgd.db",
              categoryName="ScISIC",
              pvalueCutoff=0.01,
              testDirection="over")

categoryToEntrezBuilder(params)[1:2]