Description Usage Arguments Value Author(s) Examples

View source: R/omnibusTest-functions.R

Function to calculate the ratio of genes that characterize a phenotype (observed) among the genes that characterize a biological complex versus the ratio of a set of randomly sampled genes (expected) among the genes that characterize a biological complex.

1 | ```
densityEstimate(genename,interactome,perm)
``` |

`genename` |
Character vector of the gene names that characterize a specific phenotype. |

`interactome` |
Contingency matrix of genes (rows) and biological
complexes (columns) (see package |

`perm` |
Numeric vector indicating the number of simulations to run to compute the expected ratios. |

List of observed and simulated ratios.

N. LeMeur

1 2 3 4 5 | ```
data(ScISI)
data(essglist)
essential <- names(essglist)
ScISI <- as.matrix(ScISI)
ratio<- densityEstimate(genename=essential,interactome=ScISI,perm=50)
``` |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.