buildFDMat: Build fitness defect contingency matrix

In PCpheno: Phenotypes and cellular organizational units

Description

Function to build a fitness defect contingency matrix where rows correspond to tested genes and columns to experimental conditions.

Usage

buildFDMat(data,genenames,condition)

Arguments

data	List of 'significant' fitness defect scores and the associated genes at different experimental conditions.
condition	Character vector of the different experimental conditions tested
genenames	Character vector of all the tested genes for fitness defect.

Value

Contingency matrix of genes that present significant fitness defect in different experimental conditions.

Author(s)

N. LeMeur

Examples

 data(GiaeverPheno)
 data(GiaeverExpCdt)
 data(GiaeverGene)
 fitnessData <- getFDgene(GiaeverPheno,condition=GiaeverExpCdt,cutoff=c(20,100,100),mode="generation",subset=c(5,15,20))
 GiaeverPhenoM <- buildFDMat(data=fitnessData,genenames=GiaeverGene,condition=GiaeverExpCdt[,3])

PCpheno documentation built on Nov. 8, 2020, 5:10 p.m.