Lesage: Data from Lesage et al. 2005

In PCpheno: Phenotypes and cellular organizational units

Description

Lesage et al. (2005) assembled a network of 316 interactions among 163 genes using deletion mutants in CHS1, CHS3, CHS4, CHS5, CHS6, CHS7 and BNI4 in a synthetic genetic array analysis.

Usage

data(LesageRaw)

Format

LesageRaw is a 5 column dataframe.

SYSTEMATIC

Systematic gene names. NOTE: All mutants are isogenic to BY4741 (MATa his3\u0394 leu2\u0394 met15\u0394 ura3\u0394) except anp1\u0394 and mnn9\u0394 that are isogenic to BY4742 (MAT\u03b1 his3\u0394 leu2\u0394 lys2\u0394 ura3\u0394).

COMMUN

Commun gene names.

CFW

Mutants showing increased, decreased or wild type sensitivity to Calcofluor white are scored s, r, or wt, respectively.

ChitinLevel

Chitin level (nmole GlcNAc/mg dry weight). Values are an average of at least three independent determinations. Values statistically higher and lower than wild type (p < 0.01) are highlighted in red and green, respectively.

ChitinLevel.SD

Standard deviation of the average of at least three independent determinations of Chitin level.

Author(s)

N. LeMeur

Source

Lesage et al. (2005), supplementary information: http://www.biomedcentral.com/1471-2156/6/8/suppl/S2 or ftp://genome-ftp.stanford.edu/pub/yeast/systematic_results/phenotypes

References

Lesage G, Shapiro J, Specht CA, Sdicu AM, Menard P, Hussein S, Tong AH, Boone C, Bussey H. (2005) An interactional network of genes involved in chitin synthesis in Saccharomyces cerevisiae.BMC Genet.6(1):8. PMID: 15715908

Examples

data(LesageRaw)
str(LesageRaw)

PCpheno documentation built on Nov. 8, 2020, 5:10 p.m.