KEGG2SCISI: Mapping between KEGG and ScISI
In PCpheno: Phenotypes and cellular organizational units
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Count the number of genes shared between a KEGG pathway and a protein
complex from the ScISI interactome.
Usage
1
KEGG2SCISI(pw, pc, pcMat, pwMat)
Arguments
pw
list of pathway names
pc
list of complex names
pwMat
pathway incidence matrix
pcMat
complex incidence matrix
Value
matrix
Author(s)
N. LeMeur
See Also
ScISI KEGG
Examples
1
2
3
4
5
data(ScISIC)
## Mapping from Yeast genes to KEGG pathways.
KeggMat <- PWAmat("org.Sc.sgd")
KEGG2SCISI(pw = colnames(KeggMat)[1:5], pc = colnames(ScISIC)[1:5], pwMat =
KeggMat, pcMat =ScISIC)
PCpheno documentation built on Nov. 8, 2020, 5:10 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Count the number of genes shared between a KEGG pathway and a protein complex from the ScISI interactome.
Usage
1 | KEGG2SCISI(pw, pc, pcMat, pwMat)
|
Arguments
pw |
list of pathway names |
pc |
list of complex names |
pwMat |
pathway incidence matrix |
pcMat |
complex incidence matrix |
Value
matrix
Author(s)
N. LeMeur
See Also
ScISI KEGG
Examples
1 2 3 4 5 | data(ScISIC)
## Mapping from Yeast genes to KEGG pathways.
KeggMat <- PWAmat("org.Sc.sgd")
KEGG2SCISI(pw = colnames(KeggMat)[1:5], pc = colnames(ScISIC)[1:5], pwMat =
KeggMat, pcMat =ScISIC)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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